Save program settings with CloneApp in Windows

Last update: 08/10/2025
Author Isaac
  • CloneApp copies and restores program settings (Registry and folders) for clean migrations in Windows.
  • Supports from 119 to more than 240 apps and 247 plugins, and allows custom copies.
  • Works without installation, with key options: paths, separate folders, 7z compression, and conflict management.
  • Includes easy restore and key plugins; ideal for pairing with batch installers like Ninite.

Guide to saving settings with CloneApp

If you've ever had a new computer or a clean install and found yourself manually reconfiguring everything, you know how tedious it can be. Losing profiles, preferences, and fine-tuning settings of your programs is exactly what turns a migration into an odyssey, especially when you take care of every detail.

To put an end to this ordeal, there is a very specific tool: CloneApp. This free and portable software for Windows It knows where your applications store their settings (folders, files, and, most importantly, the Registry) and allows you to back them up and restore them when you change PCs or reinstall your system. It's not magic, but it is a very intelligent automation that saves you hours.

What is CloneApp and how does it work?

Clone App It is a tool designed for back up your settings of numerous Windows applications. It doesn't create a system image or move executables; it focuses on the data that sets your preferences. Detect what you have installed, knows which registry keys and folders to copy, and generates a copy ready to restore later.

The application stands out for being portable (no installation required) and very light. Various reviews mention that it weighs just 300 KB in version 2.0 and, in others downloads, is around 1 MB. Be that as it may, fits in any USB of maintenance and it works on all modern versions of Windows as long as you run it as administrator.

Program support has grown with There. In some tests compatibility is recorded with 119 applications; in others, it is spoken of more than 240 apps y 247 plugins to expand your reach. In practice, you'll see two key lists: Supported (all the apps that know how to clone) and Installed (the ones you have on your PC), and from there you choose what to save.

Important: CloneApp does not replace a full backup of the system. Its mission is to rescue settings and customizations. However, it does this very well with popular programs like CCleaner, Google Chrome, Firefox, FileZilla, GIMP, Microsoft Office or widely used players and utilities.

How CloneApp works

Real advantages and limitations

The big advantage is obvious: save time and avoid human errorsInstead of searching program by program for paths in AppData or manually exporting parts of the Registry, CloneApp now includes these "cookbooks" for hundreds of apps and performs batch backups.

That said, it doesn't work miracles. If you use very strange software (the typical rara avis) may not have script predefined. It won't magically migrate licenses either: you'll need your keys and, if necessary, activate them again. Even so, you'll be able to create custom copies to save directories and branches from the Registry of unsupported apps.

Another good news is stability. In various tests it behaves reliability when cloning the Registry of known applications, although, as in everything backup of configurations, there may be specific cases that require manual adjustments or second passes.

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The performance is correct, but the process is not instantaneous. Depending on how many apps and how much configuration If a backup needs to be copied, it can take a while. For large migrations, set aside time and let it work without rushing.

Advantages and limitations of CloneApp

Prerequisites and preparation

Before starting, the essential thing is to open CloneApp with administrator privileges. It's the difference between an incomplete backup and a truly useful one. Right-click the executable and choose "Run as administrator."

It will also help you plan. Make a list of critical programs (browsers, office software, editors, FTP clients, players, system utilities), locate licensors and, if you're changing PCs, have a USB or cloud folder on hand to take the copy with you.

Download, execution and first views

Download the latest version from the official website and unzip the ZIP file. It doesn't install: just run the EXEWhen you open it, you'll see it identifies your Windows version and architecture. On the left, the main menu; on the right, the tabs with the list of apps.

Navigation is simple: Home, Clone, Restore, Custom and OptionsYou'll quickly become familiar with the "Supported" and "Installed" options for choosing what to clone, as well as action buttons like "Backup," "Start Clone App," or "Restore."

Configure critical options (Options)

Before you touch anything, go into Options and adjust the important things. Define the copy path This avoids any unpleasant surprises and makes it easier to move your data later. By default, it creates a "Backup" folder in the same directory as the program; it's convenient to leave it that way, but you can change it with "Browse."

In the same panel configure the log file path with all the actions performed by the backup. This is useful for auditing, reviewing what has been backed up, and diagnosing any warnings or conflicts.

Decide how you want to organize the data: “Clone Apps in separate folder” It forces a subdirectory for each application, making it easier to selectively inspect or restore. If you disable it, it will dump everything together, which is less tidy but still valid in controlled environments.

If you are concerned about space, activate “Enable 7z Compression”Compress your backup to save megabytes, ideal when uploading to the cloud or using a limited flash drive. Keep in mind that compressing adds some time to the process.

In case of conflicts, you can choose to see everything or go “automatically”. With “Display dialogue in Clone Conflicts” You will have on-screen warnings; when switching to “Respond silent to all Clone conflicts” will respond “Yes” to everything without interaction, useful for unattended processes.

What exactly does CloneApp save?

The button “What is being backed up?” It's a must-have. It shows you the list of paths and keys it's going to copy, so you know exactly what's being saved. Broadly speaking, the tool typically backs up:

  • Registry Keys where preference and local licenses reside.
  • Configuration folders in AppData (Roaming/Local) and in program directories.
  • Settings files (e.g. XML, INI, JSON and similar).

This data-centric approach means that after reinstalling the system or moving to another computer, restore the same “personality” of your applications without having to reconfigure everything.

Clone settings step by step

Go to the tab Clone and check “Supported” (everything CloneApp can handle) versus “Installed” (what was detected on your computer). The typical flow is to mark the programs you want to clone or use as Supported. “Select Installed” so that the system selects, at once, everything compatible that it finds installed.

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If you want to validate that you haven't missed anything, go back to “Installed” and review the list of applications that you actually have. It's common to be surprised by forgotten utilities; it's better to include them early than to discover them on your new PC.

Balance “Start CloneApp” (or “Backup”, depending on the view) to start the process. From that moment on, the program will copy keys and folders for each selected app. Depending on the volume, this may take a while; for large migrations, allow a good amount of time.

When you're done, you'll have an organized structure of your data in your backup path. If you enabled separate folders, you'll see one directory per application, making it easy to review and, if necessary, manually discard anything you don't want to move.

Restore to the new computer or after a clean installation

Now comes the moment of truth: move everything to your new environment. Copy the CloneApp folder with its directory. Backup to a USB or to the cloud, take it to the new PC and run CloneApp as administrator.

Go to section "Restore"The tool will automatically detect the copy (if not, it will ask you for the path). With one click, it will recreate Registry entries and folders in place. When it's done, open your apps—they should appear with the same settings as on the original device.

If you prefer selective restores (for example, only browsers and office), you can uncheck what you are not interested in and run the restore piecemeal. Keep the log handy in case you need to review exactly what was restored.

Custom copies for non-compatible apps

Not everything is on the Supported list, and that's where the tab comes in Custom. It's used to define your own backup sources: folders, individual files, or registry keys. It's a backup plan for less common tools.

A typical example: locate the application folder (for example, in Program Files or AppData), press “Folders”, then “Browse” and “Add” to add routes. Repeat with configuration files specific files or branches of the Registry. Then, “Start Backup” and you’ll have your customized backup.

This approach ensures that even if CloneApp doesn't come with a pre-made script, you can take the adjustments with you of virtually any program that saves its settings to disk or the Registry.

CloneApp UA for UWP apps

If you need to clone configurations from the Universal Windows Platform (UWP)There's a variant called CloneApp UA designed for that ecosystem. It's useful with Microsoft Store apps where the location and permissions differ from classic Win32 apps.

The philosophy is the same: backup and restore settings To avoid losing customization when reinstalling or switching devices, consider combining CloneApp and CloneApp UA if you're using Win32 and UWP apps.

Plugins and key recovery

In addition to the cloning core, CloneApp supports plugins like Product KeyFinder y Backup Product KeysThey are perfect for recovering keys for Windows, Office, Adobe, and other products, as long as they are available on the system.

Don't trust your entire license to the configuration copy: save your keys in duplicatePlugins make this task easier and complete the migration package so that if something requires activation, you have it handy.

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Comparison with other tools

Tools like Ninite They are great for batch installation, but they don't solve the configuration problem. The winning combination for migrations is usually: Ninite (or your preferred manager) for quick and easy installation. CloneApp to return settingsOne puts the programs together; the other adds your personal touch.

Classic image backups (disk cloning type) are a different story. They serve to duplicate everything, but they weigh a lot and you don't always want to drag bloat or problems. CloneApp stands out when you're looking for a clean install with your preferences, without carrying everything else.

Good practices and tips

  • Always run CloneApp as administratorIt seems like a small detail, but it determines whether the backup will be able to touch all critical paths and write all necessary keys during the restore.
  • Usa separate folders By application, whenever possible. It's easier to audit content, delete what you don't want to move, and resolve specific conflicts without touching the rest of the backup.
  • Activate the 7z compression if you work with large copies or storage Limited. In exchange for a few extra seconds of processing, you'll gain space and find cloud syncing more convenient.
  • Take advantage of “Select Installed" to preselect everything compatible that you actually have in your system. Then uncheck anything you're not interested in; you'll save time and avoid oversights.
  • Before closing the migration, open a handful of key programs and check that the configuration is “as is”. If something fails, check the log, run CloneApp again and selectively restore the app in question, and if necessary, use tools to recover files from hard drive.

Which apps usually work best

In practice, CloneApp looks especially good with browsers (Chrome, Firefox, Edge), office automation (Microsoft Office), utilities (CCleaner), FTP clients (FileZilla), editors, players and games (copies of saved games). These are apps with well-known configuration locations and mature scripts.

If you're working with very specific software, test it first. The “What is being backed up?” button It will show you what it intends to copy. If you find anything missing, complete it using the Custom tab by manually adding paths and keys.

Limitations to consider

Remember: CloneApp it is not an installer. Install your programs first (preferably with Ninite or your own scripts) and then restore the configuration with CloneApp. This is the logical order to avoid conflicts.

Some applications store part of your identity in user folders or cloud services (synchronized profiles). In these cases, the restoration may overlap with its own mechanisms; decide whether it's best to use only one of the two to avoid mixing states.

In corporate environments, group policies or restrictions may block certain registry writes or paths. Validate on a test computer and, if applicable, run the restore with the appropriate account or elevate permissions.

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